A B C D E F G H I L M N O P R S T U V W Z

S

SAVE_AS_PARAM - Static variable in class org.jactr.tools.io.ModelRecorder

saveModel(IModel, String, String, boolean) - Static method in class org.jactr.tools.io.ModelRecorder

SCENE_CHANGE_THRESHOLD_PARAM - Static variable in class org.jactr.modules.pm.visual.scene.SceneChangeExtension

SCENE_CHANGED_SLOT - Static variable in class org.jactr.modules.pm.visual.scene.SceneChangeExtension

SCENE_CHANGED_VALUE_SLOT - Static variable in class org.jactr.modules.pm.visual.scene.SceneChangeExtension

SceneChangeExtension - Class in org.jactr.modules.pm.visual.scene

Provides scene change detection functionality without touching the core distribution.

SceneChangeExtension() - Constructor for class org.jactr.modules.pm.visual.scene.SceneChangeExtension

SceneChangeListener - Class in org.jactr.modules.pm.visual.scene

Scene change listener that implements both IVisualFeatureMapListener to track changes to the IVisualModule's IVisualMap's feature maps, and IAfferentListener which allows the listener to circumvent the visual module and go straight to the source of the percepts.

SceneChangeListener() - Constructor for class org.jactr.modules.pm.visual.scene.SceneChangeListener

SceneChangeParticipant - Class in org.jactr.modules.pm.visual.scene

the participant allows the IO system to inject the contents of scene.jactr into any model that usess SceneChangeExtension in the model definition file.

SceneChangeParticipant() - Constructor for class org.jactr.modules.pm.visual.scene.SceneChangeParticipant

SCRIPT - Static variable in class org.jactr.tools.itr.ortho.exec.ExecAnalyzer

SELECT_ALL - Static variable in class org.jactr.tools.grapher.core.parser.Parser

SEND_MODEL_ON_SUSPEND_PARAM - Static variable in class org.jactr.tools.async.controller.RemoteInterface

SequenceAnalyzer - Class in org.jactr.tools.analysis.production

SequenceAnalyzer() - Constructor for class org.jactr.tools.analysis.production.SequenceAnalyzer

SERVICE_CLASS - Static variable in class org.jactr.tools.async.common.MINAEndpoint

sessionClosed(IoSession) - Method in class org.jactr.tools.async.common.BaseIOHandler

sessionClosed(IoSession) - Method in class org.jactr.tools.async.controller.RemoteIOHandler

sessionClosed(IoSession) - Method in class org.jactr.tools.async.shadow.ShadowIOHandler

sessionOpened(IoSession) - Method in class org.jactr.tools.async.common.BaseIOHandler

sessionOpened(IoSession) - Method in class org.jactr.tools.async.controller.RemoteIOHandler

sessionOpened(IoSession) - Method in class org.jactr.tools.async.shadow.ShadowIOHandler

setAddressInfo(String) - Method in class org.jactr.tools.async.common.MINAEndpoint

set the string version of the address, if the transport has already been provided, the acutal address will be recomputed

setAmbiguousRelationships(String, Collection<IPair>) - Method in class org.jactr.tools.analysis.production.relationships.DefaultRelationship

setBreakpointData(String, CommonTree) - Method in class org.jactr.tools.async.shadow.ShadowController

setBufferParameter(CommonTree, String, String, String) - Static method in class org.jactr.tools.itr.BufferParameterModifier

setColumnAt(long, Collection) - Method in interface org.jactr.tools.data.IMutableDataSource

setColumnAt(String, Collection) - Method in interface org.jactr.tools.data.INamedMutableDataSource

setCredentialInformation(String) - Method in class org.jactr.tools.async.common.MINAEndpoint

set the connection credentials

setCredentials(ICredentials) - Method in class org.jactr.tools.async.common.BaseIOHandler

setCredentialsClass(Class<? extends ICredentials>) - Method in class org.jactr.tools.async.common.MINAEndpoint

setDeadLockListener(IDeadLockListener) - Method in class org.jactr.tools.async.iterative.tracker.IterativeRunTracker

setExecutor(Executor) - Method in class org.jactr.tools.async.controller.RemoteInterface

setExecutor(String) - Method in class org.jactr.tools.tracer.RuntimeTracer

setExecutorService(ExecutorService) - Method in class org.jactr.tools.async.common.MINAEndpoint

set the executor for use by MINA

setFlagEnabled(boolean) - Method in class org.jactr.tools.itr.ortho.impl.SliceAnalysis

setGoalFeeder(GoalFeeder) - Static method in class org.jactr.tools.bridge.GoalFeeder

Deprecated.

setGroupId(String) - Method in class org.jactr.tools.grapher.core.selector.AbstractNameSelector

setGroupId(String) - Method in interface org.jactr.tools.grapher.core.selector.ISelector

setIsQuery(boolean) - Method in class org.jactr.tools.analysis.production.endstates.BufferEndState

setModel(ProbeModel) - Method in class org.jactr.tools.probes.ui.ProbePanel

setModelDescriptor(CommonTree) - Method in class org.jactr.tools.analysis.production.ProductionAnalyzer

setModelDescriptor(String, CommonTree) - Method in class org.jactr.tools.async.shadow.ShadowController

setModuleParameter(CommonTree, String, String, String) - Static method in class org.jactr.tools.itr.ModuleParameterModifier

setNegativeRelationships(String, Collection<IPair>) - Method in class org.jactr.tools.analysis.production.relationships.DefaultRelationship

setNotes(String) - Method in class org.jactr.tools.itr.ortho.impl.SliceAnalysis

setNotes(String) - Method in interface org.jactr.tools.itr.ortho.ISliceAnalysis

setParameter(String, String) - Method in class org.jactr.entry.iterative.impl.GeneralPerformanceListener

setParameter(String, String) - Method in class org.jactr.entry.iterative.impl.RealTimeFactorPerformanceListener

setParameter(String, String) - Method in class org.jactr.modules.general.GeneralBufferModule

setParameter(String, String) - Method in class org.jactr.modules.pm.visual.scene.SceneChangeExtension

setParameter(String, String) - Method in class org.jactr.tools.async.common.MINAEndpoint

setParameter(String, String) - Method in class org.jactr.tools.async.controller.RemoteInterface

setParameter(String, String) - Method in class org.jactr.tools.async.iterative.listener.NetworkedIterativeRunListener

setParameter(String, String) - Method in class org.jactr.tools.change.ChangeTracker

setParameter(String, String) - Method in class org.jactr.tools.grapher.core.GeneralProbe

setParameter(String, String) - Method in class org.jactr.tools.io.ModelRecorder

this chunk of code will permit the ModelRecorder to be configured when the environment.xml file is loaded

setParameter(CommonTree, String) - Method in class org.jactr.tools.itr.AbstractParameterModifier

setParameter(CommonTree, int) - Method in class org.jactr.tools.itr.AbstractParameterModifier

setParameter(String, String) - Method in class org.jactr.tools.itr.AbstractParameterModifier

setParameter(String, String) - Method in class org.jactr.tools.itr.BufferParameterModifier

setParameter(String, String) - Method in class org.jactr.tools.itr.ChunkParameterModifier

setParameter(String, String) - Method in class org.jactr.tools.itr.ChunkTypeSlotModifier

setParameter(String, String) - Method in class org.jactr.tools.itr.fit.AbstractModelFitAnalysis

Deprecated.

setParameter(CommonTree, int) - Method in interface org.jactr.tools.itr.IParameterModifier

setParameter(CommonTree, String) - Method in interface org.jactr.tools.itr.IParameterModifier

setParameter(CommonTree, int) - Method in class org.jactr.tools.itr.LongitudinalParameterSetModifier

setParameter(String, String) - Method in class org.jactr.tools.itr.ModuleParameterModifier

setParameter(String, String) - Method in class org.jactr.tools.itr.ortho.exec.ExecAnalyzer

setParameter(String, String) - Method in class org.jactr.tools.itr.ortho.OrthogonalSliceAnalyzer

setParameter(CommonTree, int) - Method in class org.jactr.tools.itr.ParameterSetModifier

setParameter(CommonTree, String) - Method in class org.jactr.tools.itr.ParameterSetModifier

setParameter(String, String) - Method in class org.jactr.tools.itr.ParameterSetModifier

setParameter(String, String) - Method in class org.jactr.tools.itr.ProductionParameterModifier

setParameter(String, String) - Method in class org.jactr.tools.itr.pspace.OrthogonalParameterSpaceSearcher

Deprecated.

setParameter(CommonTree, String) - Method in class org.jactr.tools.itr.SystemPropertyModifier

setParameter(CommonTree, int) - Method in class org.jactr.tools.itr.SystemPropertyModifier

setParameter(String, String) - Method in class org.jactr.tools.itr.SystemPropertyModifier

setParameter(String, String) - Method in class org.jactr.tools.itr.ZipDataListener

setParameter(String, String) - Method in class org.jactr.tools.stat.StatTracker

setParameter(String, String) - Method in class org.jactr.tools.tracer.RuntimeTracer

setParameter(String, String) - Method in class org.jactr.tools.track.chunktype.ChunkTypeProductionTracker

setParameter(String, String) - Method in class org.jactr.tools.utility.UtilityTracker

setParameterName(String) - Method in class org.jactr.tools.itr.AbstractParameterModifier

setParameterValues(Collection<String>) - Method in class org.jactr.tools.itr.AbstractParameterModifier

setPollable(boolean) - Method in class org.jactr.tools.grapher.core.probe.AbstractParameterizedProbe

setPositiveRelationships(String, Collection<IPair>) - Method in class org.jactr.tools.analysis.production.relationships.DefaultRelationship

setProductionEnabled(String, String, boolean) - Method in class org.jactr.tools.async.shadow.ShadowController

setProperty(String, Object) - Method in class org.jactr.tools.itr.ortho.impl.Slice

setProtocol(IMINAProtocolConfiguration) - Method in class org.jactr.tools.async.common.MINAEndpoint

set our protocol

setRender(ProbeRenderer) - Method in class org.jactr.tools.probes.ui.ProbePanel

setResponseCollector(ResponseCollector) - Static method in class org.jactr.tools.bridge.ResponseCollector

Deprecated.

setResult(Object) - Method in class org.jactr.tools.itr.ortho.impl.SliceAnalysis

setRowAt(long, Collection) - Method in interface org.jactr.tools.data.IMutableDataSource

setSceneChangeThreshold(double) - Method in class org.jactr.modules.pm.visual.scene.SceneChangeExtension

setScore(String, double) - Method in class org.jactr.tools.analysis.production.relationships.DefaultRelationship

setSendOnSuspend(boolean) - Method in class org.jactr.tools.async.controller.RemoteInterface

setService(IMINAService) - Method in class org.jactr.tools.async.common.MINAEndpoint

set the service for this end point (typically ClientServie or ServerService)

setTraceSink(ITraceSink) - Method in class org.jactr.tools.grapher.core.GeneralProbe

setTraceSink(ITraceSink) - Method in class org.jactr.tools.tracer.listeners.BaseTraceListener

setTraceSink(ITraceSink) - Method in interface org.jactr.tools.tracer.listeners.ITraceListener

setTraceSink(ITraceSink) - Method in class org.jactr.tools.tracer.RuntimeTracer

where should we send all the transformed events to?

setTransportProvider(IMINATransportProvider) - Method in class org.jactr.tools.async.common.MINAEndpoint

set the provider and possibly update the address information

setValueAt(long, long, Object) - Method in interface org.jactr.tools.data.IMutableDataSource

setValueAt(long, String, Object) - Method in interface org.jactr.tools.data.INamedMutableDataSource

ShadowController - Class in org.jactr.tools.async.shadow

a mock controller that is to be used to interface with the real one controller.NetworkedDebugController

ShadowController() - Constructor for class org.jactr.tools.async.shadow.ShadowController

ShadowIOHandler - Class in org.jactr.tools.async.shadow

ShadowIOHandler(ShadowController) - Constructor for class org.jactr.tools.async.shadow.ShadowIOHandler

shouldSuspendImmediately() - Method in interface org.jactr.tools.async.message.command.state.IRuntimeStateCommand

shouldSuspendImmediately() - Method in class org.jactr.tools.async.message.command.state.RuntimeStateCommand

SimpleBufferEndState - Class in org.jactr.tools.analysis.production.endstates.impl

SimpleBufferEndState(String, String, String, CommonTree...) - Constructor for class org.jactr.tools.analysis.production.endstates.impl.SimpleBufferEndState

first commontree is the equality, everything else is the not

SimpleBufferEndState(String, String, CommonTree...) - Constructor for class org.jactr.tools.analysis.production.endstates.impl.SimpleBufferEndState

SINK_CLASS - Static variable in class org.jactr.tools.tracer.RuntimeTracer

Slice - Class in org.jactr.tools.itr.ortho.impl

Slice(long, long, long) - Constructor for class org.jactr.tools.itr.ortho.impl.Slice

SliceAnalysis - Class in org.jactr.tools.itr.ortho.impl

SliceAnalysis(ISlice, String) - Constructor for class org.jactr.tools.itr.ortho.impl.SliceAnalysis

slotIsApplicable(CommonTree, CommonTree) - Static method in class org.jactr.tools.analysis.production.endstates.impl.BufferStateUtilities

compare two slots to see if they are applicable, this is just a name check

sourceChunkAdded(ActivationBufferEvent) - Method in class org.jactr.tools.tracer.listeners.BufferTracer

sourceChunkRemoved(ActivationBufferEvent) - Method in class org.jactr.tools.tracer.listeners.BufferTracer

sourceChunksCleared(ActivationBufferEvent) - Method in class org.jactr.tools.tracer.listeners.BufferTracer

start(int) - Method in interface org.jactr.entry.iterative.IIterativeRunListener

start(int) - Method in class org.jactr.entry.iterative.impl.GeneralPerformanceListener

start(int) - Method in class org.jactr.entry.iterative.impl.RealTimeFactorPerformanceListener

start(int) - Method in class org.jactr.tools.async.iterative.listener.NetworkedIterativeRunListener

start() - Method in class org.jactr.tools.async.iterative.tracker.IterativeRunTracker

start() - Method in class org.jactr.tools.async.shadow.ShadowController

start(boolean) - Method in class org.jactr.tools.async.shadow.ShadowController

start(int) - Method in class org.jactr.tools.itr.AbstractParameterModifier

start(SortedMap<String, Integer>) - Method in interface org.jactr.tools.itr.analysis.IAnalyzer

Deprecated. called before any runs start.

start(int) - Method in class org.jactr.tools.itr.fit.AbstractModelFitAnalysis

Deprecated.

start(int) - Method in class org.jactr.tools.itr.ortho.OrthogonalSliceAnalyzer

start(int) - Method in class org.jactr.tools.itr.pspace.OrthogonalParameterSpaceSearcher

Deprecated.

start(int) - Method in class org.jactr.tools.itr.ZipDataListener

create the zip file

START_INDEX_OPTION - Static variable in class org.jactr.tools.itr.ortho.exec.ExecAnalyzer

START_PARAM - Static variable in class org.jactr.tools.io.ModelRecorder

startCollection(int, SortedMap<String, Integer>, SortedMap<String, String>) - Method in interface org.jactr.tools.itr.analysis.IAnalyzer

Deprecated. called at the start of any given cluster of iterative runs, marking the start of a new block that should be used in the calculation of model fit

started(Collection<String>) - Method in class org.jactr.tools.async.shadow.ShadowController

called by the io handler only when the runtime has actually started.

startIteration(ISlice, long, Collection<IModel>) - Method in class org.jactr.tools.itr.LongitudinalParameterSetModifier

startIteration(ISlice, long, Collection<IModel>) - Method in interface org.jactr.tools.itr.ortho.ISliceListener

called just before the models are to be run, but after their parameters have been set

startSlice(ISlice) - Method in class org.jactr.tools.itr.LongitudinalParameterSetModifier

called before loading, we get a chance to copy models in..

startSlice(ISlice) - Method in interface org.jactr.tools.itr.ortho.ISliceListener

called when a new slice is starting

StatTracker - Class in org.jactr.tools.stat

stat tracker that records the number of chunks, types and productions, as well as running time (simulated and actual).

StatTracker() - Constructor for class org.jactr.tools.stat.StatTracker

StatusMessage - Class in org.jactr.tools.async.iterative.message

StatusMessage(boolean, int, int) - Constructor for class org.jactr.tools.async.iterative.message.StatusMessage

statusSlotChanged(ActivationBufferEvent) - Method in class org.jactr.tools.tracer.listeners.BufferTracer

stop() - Method in interface org.jactr.entry.iterative.IIterativeRunListener

stop() - Method in class org.jactr.entry.iterative.impl.GeneralPerformanceListener

stop() - Method in class org.jactr.entry.iterative.impl.RealTimeFactorPerformanceListener

stop() - Method in class org.jactr.tools.async.iterative.listener.NetworkedIterativeRunListener

stop() - Method in class org.jactr.tools.async.iterative.tracker.IterativeRunTracker

stop() - Method in class org.jactr.tools.async.shadow.ShadowController

stop(String) - Method in class org.jactr.tools.async.shadow.ShadowController

stop() - Method in class org.jactr.tools.itr.AbstractParameterModifier

stop(Object[], SortedMap<String, List<String>>) - Method in interface org.jactr.tools.itr.analysis.IAnalyzer

Deprecated. all of the runs have completed.

stop() - Method in class org.jactr.tools.itr.fit.AbstractModelFitAnalysis

Deprecated.

stop() - Method in class org.jactr.tools.itr.ortho.OrthogonalSliceAnalyzer

stop() - Method in class org.jactr.tools.itr.pspace.OrthogonalParameterSpaceSearcher

Deprecated.

stop() - Method in class org.jactr.tools.itr.ZipDataListener

clean up

STOP_INDEX_OPTION - Static variable in class org.jactr.tools.itr.ortho.exec.ExecAnalyzer

STOP_PARAM - Static variable in class org.jactr.tools.io.ModelRecorder

stopCollection(SortedMap<String, Integer>, SortedMap<String, String>) - Method in interface org.jactr.tools.itr.analysis.IAnalyzer

Deprecated. called at the end of the analysis block.

stopIteration(ISlice, long, Collection<IModel>) - Method in class org.jactr.tools.itr.LongitudinalParameterSetModifier

stopIteration(ISlice, long, Collection<IModel>) - Method in interface org.jactr.tools.itr.ortho.ISliceListener

stopped(String) - Method in class org.jactr.tools.async.shadow.ShadowController

called by the io handler only when the runtime has stopped.

stopSlice(ISlice) - Method in class org.jactr.tools.itr.LongitudinalParameterSetModifier

stopSlice(ISlice) - Method in interface org.jactr.tools.itr.ortho.ISliceListener

called after a slice has completed

StringTableMessage - Class in org.jactr.tools.grapher.core.message

StringTableMessage(String, double, Map<Long, String>) - Constructor for class org.jactr.tools.grapher.core.message.StringTableMessage

suspend() - Method in class org.jactr.tools.async.shadow.ShadowController

suspend(String) - Method in class org.jactr.tools.async.shadow.ShadowController

suspended(String) - Method in class org.jactr.tools.async.shadow.ShadowController

called by the io handler only to signal that the runtime (where ever it is) has been suspended.

SystemPropertyModifier - Class in org.jactr.tools.itr

SystemPropertyModifier() - Constructor for class org.jactr.tools.itr.SystemPropertyModifier