org.jactr.tools.itr.ortho.exec
Class ExecAnalyzer

java.lang.Object
  org.jactr.tools.itr.ortho.exec.ExecAnalyzer

All Implemented Interfaces:

org.jactr.core.utils.parameter.IParameterized, ISliceAnalyzer

public class ExecAnalyzer
extends java.lang.Object
implements ISliceAnalyzer, org.jactr.core.utils.parameter.IParameterized

default slice analyzer that has a single parameter AnalysisScript which will be executed when the analysis is requested. This allows aribitrary analysis tools to be used.

There are special variables that can be expanded on the command line: ${parameters} will expand to a space separated list of key=value pairs for the parameters manipulated. ${start} and ${stop} expand to the iteration indexes for this slice. ${directories} expands to a space separated list of the model execution directories (relative to the root working directory). ${workingDir} expands to the location of the prefered working directory for this particular analysis (typically: {root}/report/{sliceNumber}).

This analyzer can also parse limited output from the analysis script. One item per line, the analyzer looks for the following tokens:
FIT: label key1 value1 key2 value2
DETAIL: label workingDirRelativeFileLocation
IMAGE: label workingDirRelativeFileLocation

DETAIL: and IMAGE: allow you to return the label and location of images or additional information files. FIT: allows you to return a label for the fit of a specific metric, followed by the actual statistic names and values. It also looks for a specific key of 'flag' and value 'true' or 'false', which it uses to highlight the particular slice.

Author:

harrison

Field Summary

static java.lang.String	DETAIL_KEY
static java.lang.String	DIRECTORIES_OPTION
static java.lang.String	FIT_KEY
static java.lang.String	IMAGE_KEY
static java.lang.String	PARAMETERS_OPTION
static java.lang.String	SCRIPT
static java.lang.String	START_INDEX_OPTION
static java.lang.String	STOP_INDEX_OPTION
static java.lang.String	WORKING_DIRECTORY_OPTION

Constructor Summary

ExecAnalyzer()

Method Summary

java.lang.Object	analyze(ISliceAnalysis sliceAnalysis) analyze the specified slice and return some value.
java.lang.String	getParameter(java.lang.String key)
java.util.Collection<java.lang.String>	getPossibleParameters()
java.util.Collection<java.lang.String>	getSetableParameters()
void	setParameter(java.lang.String key, java.lang.String value)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

SCRIPT

public static final java.lang.String SCRIPT

See Also:

Constant Field Values

PARAMETERS_OPTION

public static final java.lang.String PARAMETERS_OPTION

See Also:

Constant Field Values

START_INDEX_OPTION

public static final java.lang.String START_INDEX_OPTION

See Also:

Constant Field Values

STOP_INDEX_OPTION

public static final java.lang.String STOP_INDEX_OPTION

See Also:

Constant Field Values

DIRECTORIES_OPTION

public static final java.lang.String DIRECTORIES_OPTION

See Also:

Constant Field Values

WORKING_DIRECTORY_OPTION

public static final java.lang.String WORKING_DIRECTORY_OPTION

See Also:

Constant Field Values

FIT_KEY

public static final java.lang.String FIT_KEY

See Also:

Constant Field Values

DETAIL_KEY

public static final java.lang.String DETAIL_KEY

See Also:

Constant Field Values

IMAGE_KEY

public static final java.lang.String IMAGE_KEY

See Also:

Constant Field Values

Constructor Detail

ExecAnalyzer

public ExecAnalyzer()

Method Detail

analyze

public java.lang.Object analyze(ISliceAnalysis sliceAnalysis)

Description copied from interface: ISliceAnalyzer

analyze the specified slice and return some value. This value is entirely modeler dependent, however it should likely be serializable so that the results can be collected and transmitted back when this finally supports distributed execution

Specified by:

analyze in interface ISliceAnalyzer

Returns:

getParameter

public java.lang.String getParameter(java.lang.String key)

Specified by:

getParameter in interface org.jactr.core.utils.parameter.IParameterized

getPossibleParameters

public java.util.Collection<java.lang.String> getPossibleParameters()

Specified by:

getPossibleParameters in interface org.jactr.core.utils.parameter.IParameterized

getSetableParameters

public java.util.Collection<java.lang.String> getSetableParameters()

Specified by:

getSetableParameters in interface org.jactr.core.utils.parameter.IParameterized

setParameter

public void setParameter(java.lang.String key,
                         java.lang.String value)

Specified by:

setParameter in interface org.jactr.core.utils.parameter.IParameterized